Publications by Topic at Triple Ring Technologies

Publications by Topic

Bioanalytical Systems

J Bashkin (2000) Determining Dye-Induced DNA Mobility Shifts for DNA Sequencing Fragments by Capillary Electrophoresis. Methods in Molecular Biology, vol 162: Capillary Electrophoresis of Nucleic Acids, Vol. 1: Introduction to the Capillary Electrophoresis of Nucleic Acids, KR Mitchelson and J Chang, eds., Humana Press, pp 95-107.

O Tu, T Knott, M Marsh, K Bechtol, D Harris, D Barker, J Bashkin (1998) The Influence of Fluorescent Dye Structure on Electrophoretic Mobility of End-labeled DNA. Nucleic Acids Research, 26, 2797-2802.

V Dolnik, D Xu, A Yadav, J Bashkin, M Marsh, O Tu, E Mansfield, M Vainer, R Madabhushi, D Barker, D Harris (1998) Wall Coating for DNA Sequencing and Fragment Analysis by Capillary Electrophoresis. J Microcolumn Separations, 10, 175-184.

M Marsh, O Tu, V Dolnik, D Roach, N Solomon, K Bechtol, P Smietana, L Wang, L; X Li, P Cartwright, A Marks, D Barker, D Harris, J Bashkin (1997) High-Throughput DNA Sequencing on a Capillary Array Electrophoresis System. J. Capillary Electrophoresis 4, 83-89.

M Vainer, S Enad, V Dolnik, D Xu, J Bashkin, M Marsh, O Tu, DW Harris, DL Barker, ES Mansfield (1997) Short tandem repeat genotyping by Capillary Array Electrophoresis: Comparison of sizing accuracy and precision using different buffer systems. Genomics 41, 1-9.

SE Shadle, DF Allen, H Gouo, WK Pogozelski, JS Bashkin, T D Tullius (1996) Quantitative analysis of electrophoresis data: Novel curve fitting methodology and its application to the determination of a protein-DNA binding constant Nucleic Acids Research 25, 850-860.

J Bashkin, D Roach, M Bartosiewicz, JLeong, D Barker, R Johnston (1996) Implementation of a Capillary Array Electrophoresis Instrument. J. Capillary Electrophoresis 3, 61-68.

J Bashkin, M Marsh, D Barker, R Johnston (1996) DNA Sequencing by Capillary Electrophoresis with a Hydroxyethylcellulose Sieving Buffer. Applied and Theoretical Electrophoresis 6, 23-28.

Biomedical Optics and Spectroscopy

C Lau, O Šćepanović, J Mirkovic, S McGee, CC Yu, S Fulghum, M Wallace, J Tunnell, K Bechtel, M Feld, “Re-evaluation of model-based light-scattering spectroscopy for tissue spectroscopy,” J of Biomed Optics, 14(2), 024031-024031-8, 2009.

Z Volynskaya, AS Haka, KL Bechtel, M Fitzmaurice, R Shenk, N Wang, J Nazemi, RR Dasari, MS Feld, “Diagnosing breast cancer using diffuse reflectance spectroscopy and intrinsic fluorescence spectroscopy,” J Biomed Optics 13(2), 024012-1- 024012-9, 2008.

KL Bechtel, WC Shih, MS Feld, “Intrinsic Raman Spectroscopy for Quantitative Biological Spectroscopy, Part II: Experimental Applications,” Optics Express 16 (17), 12737-12745, 2008.

WC Shih, KL Bechtel, MS Feld, “Quantitative Biological Raman Spectroscopy,” in Handbook of Optical Sensing of Glucose in Biological Fluids and Tissues, edited by VV Tuchin (Taylor and Francis), 2008.

WC Shih, KL Bechtel, MS Feld, “Intrinsic Raman Spectroscopy for Quantitative Biological Spectroscopy, Part I: Theory and Simulations,” Optics Express 16 (17), 12726-12736, 2008.

OR Šćepanović, KL Bechtel, AS Haka, W-C Shih, T-W Koo, AJ Berger, MS Feld, “Determination of uncertainty in parameters extracted from single spectroscopic measurements,” J Biomed Optics 12(6), 064012-1- 064012-10, 2007.

WC Shih, KL Bechtel, MS Feld, “Constrained Regularization: A Hybrid Method for Multivariate Calibration,” Anal Chem, 79(1), 234-239, 2007.

KL Bechtel, RN Zare, A Kachanov, S Sanders, BA Paldus, “Moving beyond traditional UV-visible absorption detection: Cavity ring-down spectroscopy for HPLC,” Anal Chem, 77(4): 1177-1182, 2005.

KL Snyder, RN Zare, “Cavity ring-down spectroscopy as a detector for liquid chromatography,” Anal Chem, 75(13), 3086-3091, 2003.

Electroactive Polymer Actuators

J Bashkin, R Kornbluh, H Prahlad, A Wong-Foy (2008) Biomedical Applications of Dielectric Elastomer Actuators, in Biomedical applications of electroactive polymer actuators, F Carpi and E Smela, eds. (Wiley), pp. 395-410 (2009).

JS Bashkin, J Heim, H Prahlad, R Kornbluh, R Pelrine, J. Elefteriades, R Moomiaie (2008) Medical Device Applications of Dielectric Elastomer-Based Artificial Muscles. Medical Device Materials IV, Proceedings of the Materials and Processes for Medical Devices Conference 2007, Palm Desert, California, J Gilbert ed. (ASM International), pp 242-248.

Optical Detectors

P Despres, WC Barber, T Funk, KS Shah, and BH Hasegawa, “Modeling and Correction of Spatial Distortion in Position-Sensitive Avalanche Photodiodes,” IEEE Trans on Nucl Sci, 54 (1): 23-29, 2007.

P Despres, T Funk, KS Shah, and BH Hasegawa, “Monte Carlo simulations of compact gamma cameras based on avalanche photodiodes,” Phys Med Biol, 52(11), 3057-3074, 2007.

X-ray Magnetic Circular Dichroism

T Funk, A Debc , SJ George , H Wang , SP Cramer, “X-ray magnetic circular dichroism - a high energy probe of magnetic properties,” Coordination Chemistry Reviews, 249, pp. 3–30, 2005.

T Funk, P Kennepohl, AJ Di Bilio, WA Wehbi, AT Young, S Friedrich, E Arenholz, HB Gray, SP Cramer, “X-ray Magnetic Circular Dichroism of Pseudomonas aeruginosa Nickel(II) Azurin,” J Am Chem Soc, 126, 5859-5866, 2004.

X-ray Detectors

JA Heanue , DA Pearson, RE Melen, “CdZnTe detector array for a scanning-beam digital x-ray system,” Proc. SPIE Volume 3659 -- Medical Imaging 1999: Physics of Medical Imaging, JM Boone, JT Dobbins III, ed’s, pp. 718-725, 1999.

CD Boles, BE Boser, BH Hasegawa, JA Heanue, “A Multimode Digital Detector Readout for Solid-State Medical Imaging Detectors,” IEEE J Solid-State Circuits, 33(5), 733-742, 1998.

JA Heanue, JK Brown, and BH Hasegawa, “Two-Dimensional Modeling of Cd( Zn)Te Strip Detectors,” IEEE Trans Nucl Sci, 44(3), 701-707,1997.

Radionuclide Imaging

T Funk, DL Kirch, JE Koss, E Botvinick, BH Hasegawa, “A Novel Approach to Multipinhole SPECT for Myocardial Perfusion Imaging,” J Nucl Med, 47(4) 595-602, 2006.

T Funk, P Despres, WC Barber, KS Shah, and BH Hasegawa, “A Multipinhole Small Animal SPECT System with Submillimeter Spatial Resolution,” Med Phys, 33(5), 1259-68, 2006.

P Despres, WC Barber, T Funk, M McClish, KS Shah, and BH Hasegawa, “Investigation of a Continuous Crystal PSAPD-based Gamma Camera,” IEEE Trans on Nucl Sci, 53(3), 1643-1649, 2006.

T Funk, DL Kirch, M Sun, EW Izaguirre, JE Koss, BH Hasegawa, “Simulation and validation of point spread functions in pinhole imaging,” IEEE Trans on Nucl Sci, 53(5), 2729 – 2735, 2006.

T Funk, M Sun, BH Hasegawa, “Radiation dose estimate in small animal SPECT and PET,” Med Phys, 31(9), 2680-2686, 2004.

X-Ray Imaging

MA Speidel, BP Wilfley, JM Star-Lack,JA Heanue, MS Van Lysel, “Scanning-beam digital x-ray (SBDX) technology for interventional and diagnostic cardiac angiography,” Med Phys, 33(8), 2714-2727, 2006.

MA Speidel, BP Wilfley, JM Star-Lack, JA Heanue, TD Betts, MS Van Lysel, “Comparison of entrance exposure and signal-to-noise ratio between an SBDX prototype and a wide-beam cardiac angiographic system,” Med Phys, 33(8), 2728-2743, 2006.

EG Solomon, BP Wilfley, MS Van Lysel, AW Joseph, JA Heanue, “Scanning-beam digital x-ray (SBDX) system for cardiac angiography,” Proc. SPIE Volume 3659 -- Medical Imaging 1999: Physics of Medical Imaging, JM Boone, JT Dobbins III, ed’s, pp. 246-257, 1999.

High Speed Electronics

AP Lowell and W Sun, “Real-Time X-ray tomosynthesis imaging using an ATCA general-purpose data acquisition and analysis platform.” IEEE Nuclear Science Symposium Conference Record, 27-31, 2008.

Machine Vision

JS Abel, HJ Lee, and AP Lowell, “An image processing approach to frequency tracking,” in Proc IEEE 1992 Int Conf Acoust Speech, Sig Proc, San Francisco CA, 1992.

JS Abel, HJ Lee, and AP Lowell, “Machine vision techniques for sonar line tracking,” in Proc 1990 Electronic Imaging, Boston MA, 1990.

HK Nishihara and PA Crossley, “Measuring Photolithographic Overlay Accuracy and Critical Dimensions by Correlating Binarized Laplacian of Gaussian Convolutions,” IEEE Trans on Pat Anal and Mach Intell, PAMI-10, 1, 17-30, 1988.

HK Nishihara, “Practical Real-Time Imaging Stereo Matcher,” Opt Eng, 23 (5), 536-545, 1984. Reprinted in Readings in Computer Vision: Issues, Problems, Principles, and Paradigms, edited by MA Fischler and O Firschein, Morgan Kaufmann, Los Altos, 1987.

D Marr and HK Nishihara, “Visual Information Processing: Artificial Intelligence and the Sensorium Of Sight,” Technology Review, 81(1), 28-49, 1978, cover article. Reprinted in Readings in Computer Vision: Issues, Problems, Principles, and Paradigms, edited by MA Fischler and O Firschein, Morgan Kaufmann, Los Altos, 1987.

K Ikeuchi, HK Nishihara, BKP Horn, P Sovalbaro, and S Nagata, “Determining Grasp Points Using Photometric Stereo and the PRISM Binocular Stereo System,” Int’l J of Robotics Res, 5(1), 46-65, 1986

HK Nishihara and T Poggio, Stereo Vision for Robotics,” in Robotics Research: The First International Symposium, edited by M Brady and R Paul, MIT Press, Cambridge, 1984.

HK Nishihara, “Recognition of Shape in Visible-Surfaces,” in Physical and Biological Processing of Images, edited by OJ Braddick and AC Sleigh, Springer-Verlag, Berlin, 1983.

HK Nishihara and T Poggio, “Hidden cues in random line stereograms,” Nature, 300, 347-349, 1982. Cover Article.

HK Nishihara and NG Larson, “Towards a Real-Time Implementation of the Marr-Poggio Stereo Matcher,” Proc of DARPA Image Understanding Workshop. Ed: LS Baumann. Science Applications, Inc. April 1981.

HK Nishihara, “Intensity, Visible Surface, and Volumetric Representations,” Artificial Intelligence, 17, 265-284, 1981.

Embedded Systems

AP Lowell, "The Care and Feeding of Watchdogs", Embedded Systems Programming, 5(4) 1992.

Risk Management

G Rao, “Medical Device Risk Management”, Medical Design and Manufacturing West Conference, Quality Systems: A Regulatory Perspective, Anaheim, California, I, 2003.

Muon Imaging

LW Alvarez, JA Anderson, F El Bedwei, J Burkhard, A Fakhry, A Girgis, A Goneid, F Hassan, D Iverson, G Lynch, Z Miligy, AH Moussa, Mohammed-Sharkawi, and L Yazolino Search for hidden chambers in the pyramids. Science 167, 832-839, 1970.